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I want to know how to get the third parameter "df_allele" when running numbat::run_numbat() function.
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Does your package help with this type of data?
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Hi,
I am really struggling with convector. I try to launch pipeline.py but results me in some errors so I tried a step by step procedure. I have a folder of BAM files and a .bed file correctly format…
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I am trying to apply CNVkit to detection of sCNAs (somatic copy number alternations) with clinical samples.
Now, as a test I am trying to detect the sCNAs in HCC1395 cell line. I performed copy numbe…
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Hi,
I've managed to use your package successfully with some suggested tweaks in #74; thank you very much!
I'm getting CNLoH for a very commonly deleted region in my samples and the deletion is con…
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Hi thanks for creating this tool, I have the problem that the input file processed by process_fragment_file.py and the references either provided by you and also the ones created with your "generateRe…
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Hi,
I have a few questions related to the phasing options.
1. Why is the default SNP panel limited to these variants: "7.4M SNPs with minor allele frequency (MAF) > 0.05:"? If I have tumor data …
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Thank you for this wonderful tool. It's great to have logFC and allele frequency profile in the same plot as previously I have to generate them by myself with lots of efforts. It has lots of advantage…
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Thank you for providing this user friendly package. I am facing the problem in few commands as I was generating the different maps for my beadchip data. I have generated CNVs by PennCNV software and t…
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so when i give video size and canvas size as a variable of window.innerwidth and window.innerheight
clm trckr not tracking correctly ...
i cant fix video size as it depends on the system we are usin…