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10/27/21
1. can we use variant-containing sequences as test data?
2. profile vs counts information?
answer: probability output, total counts, if multiple two then come up with per base counts, as…
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> Advanced machine learning models applied to large-scale genomics datasets hold the promise to be major drivers for genome science. Once trained, such models can serve as a tool to probe the relation…
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A case that is commonly encountered in molecular biology articles is the description of interactions that occur within a sub-cellular compartment (e.g. nucleus) or near a cellular structure (e.g. plas…
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Hi! Appreciate the great work.
Is there a way to predict the structure of m6A modified RNA through this tool? I tried the web interface and I can't seem to find a way to incorporate m6A in the FASTA …
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您好，
我在运行bash run_SpeciesTax_lucaone_luca_base.sh的时候，发现一直是单卡在算，包括embedding的时候也是单卡，但是我是申请了两个dgx2卡的，请问如何设置多卡计算？
谢谢。
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For GSoC 2022, I'm working on designing more consistent interfaces to PySAL's exploratory and inferential statistics classes. My mentors and I are exploring what might need to be done to
1. render co…
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Hello Jens,
I tried to use gemoma to annotate the genome and
the input format for gff file is the same as the test data so I don't understand why it didn't work out
java -jar GeMoMa-1.9…
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This SEP proposes a set of terminology and practices for representing genetic parts and functional devices at various stages of design, synthesis, and assembly. These practices are intended to represe…
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Hi,
I'm currently working on a protein that binds to a specific 18bp DNA sequence, supported by experimental evidence, and I'm trying to identify the conserved binding motif. However, the challenge…
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### Two cluster training data (T: S3+S4)
Some final tweaks to training the model will be made in this issue. All of these tweaks will be made with Stain2, Stain3, and Stain4 in mind at the same time,…