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I have 10,000 SNP on maize genome to design DNA probe for them.
Is there a way that I can use CATCH to do that?
Thank you!
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When we specify multiple assemblies with `getset`, agc seems to buffer all the output in memory. If we pipe the agc output to another program (e.g. ropebwt3) that consumes the output slowly, agc will …
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thanks for udpating the gnomAD-converter to support the gnomAD v4 data.
It would be nice to also support the gnomAD joint v4.1 VCF dataset, which has a little different in the INFO column.
In the jo…
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Hello dear developers,
I am writing to ask you for some advice regarding the usage of your tool.
As of today, I've run a few tests on different viral genomes to test the tool, but I've always bump…
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Is it possible to use this tool on draft genome assemblies? I am trying to run an analysis by mapping reads to an incomplete genome but am running into errors on the "gen_cTU_data" step and was wonder…
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感谢您提供的软件
我运行SynDiv时卡在以下这个这一步2天了，一直在运行但是没有结果数据并且也没有报错：
`[2024-10-30 22:29:19,630] CMD: /public/home/chcg/anaconda3/envs/pangenome/bin/SynDiv_c cal -t 10 -r /public1/node3_chcg/CC_HH_ZRH1/comparative_…
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Dear CAMISIM team,
I am starting to try and use CAMISIM for a bunch of projects we have, but wonder if all of them will fit. For instance, is it possible to use CAMISIM for simulating amplicon sequ…
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Hello developers,
Thank you for developing a nice benchmarking tool. How to generate reference genomes in json format for BinBencher assessment? I couldn't understand from the documentation…
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Dear Bakta team,
Thank you again for a great tool! I am annotating the plasmid genomes of interest, and some of them are shorter than 100000 characters which is giving the following error-
`/opt…
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I've been trying to use this program to run an MK test using VCF files from the 1000 genomes project. However, I'm getting some really strange results with this method, and I'm worried I may be doing …