-
Hello all,
Until two days ago, I worked with Krona without any problems.
_Kaiju > Kaiju2Krona > ktImportText_
Then I installed a new pipeline (PhytoPipe), a pipeline with many tools, including…
-
These are:
- MEGAN LR
- METABAT
- WIMP
- centrifuge
- Kaiju
-
Hi,
I have installed kaiju on a cluster that I am working on and after I created a kaijudb directory, I am trying to execute the following:
qsub -V -cwd ../bin/kaiju-makedb -s nr_euk
The job …
-
output log file:
[root@localhost kaiju]# kaiju-mkbwt -n 16 -a ACDEFGHIKLMNPQRSTVWY -o refseq/refseq refseq/kaiju_db_refseq.faa
# infilename= refseq/kaiju_db_refseq.faa
# outfilename= refseq/refseq
…
-
abanatti
2 kaiju
waste/junker faction
-
Downloading the nr_euk database using the kaiju-makedb is failing with the following error:
Extracting taxdump.tar.gz/...
gzip: stdin: invalid compressed data--format violated
tar: Unexpected EOF …
-
### What is your suggestion?
Hi team,
A server my friends are playing on wants to do some kaiju (Godzilla etc) themed stuff. Part of what they're after is the ability for characters of a certain s…
-
Hi, I have been using kaiju recently and want to use the virus, plasmids and fungi databases from here:
https://kaiju.binf.ku.dk/server
I downloaded the databases `.tgz` files and put each `kaiju_…
-
Looking for insight/confirmation that Kaiju is operating as expected. My results thus far are suggesting that kaigu is misclassify reads that are very string BLAST hits to divergent taxa.
Specifica…
-
Hi authors,
I have paired end fastq files of cell free DNA patients infected with sepsis. I have 6 patients files
For these 6 patients the distribution is as follows
Patient 1:
Leuconost…