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Implement `_mm256_exp_pd()` for computing transition probability matrices (Issue #105 )
The intrinsic does not map to an instruction and is only available in the [Intel Small Vector Library](https://…
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Dear Dr Alexandros
I am trying to implement the AxPARAFIT software that you wrote for my co-evolution analysis. But even after checking the tutorial and data files, I cannot understand the followin…
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Dear Sir,
I am using OpenFOAM version v2106 and I cannot compile the solver. It would be really helpful sir if you tell me what OpenFOAM version did you use?
Thank you
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I did a profiling run with NetRAX, on a 1000 sites MSA (belonging to a simulated 8 taxon-tree), with 1 random and 1 parsimony starting tree. Turns out that trying arc insertion moves is pretty slow (s…
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Compute an average support/confidence score for the ML tree after a bayesian run.
1. Method:
Sum up the support values for each node of the bayesian tree
- if the corresponding node of the ML tr…
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Hello everyone,
if I want to reproject a file with the "rerpoject" command, the following error is shown:
[12:26:22 WARN] The input file uses unsupported non-CityGML namespace(s): http://www.sig…
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The completed results CSV files from the cluster experiments are finally there.
- small_network: 4-10 taxa, 1-2 reticulations, msa-size either 100*n_trees or 200*n_trees, perfect sampling, linked b…
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I wrote a quick Python script to convert the output of mPTP to a CSV file so that I could use the output with ggmap and with other things where I might want to use the output of mPTP to sort my data i…
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Hi, I'm just setting up a pipeline to place query sequences onto a phylogentic tree of ~5,000 reference sequences. I'm finding Raxml to be very slow for tree building and wondered whether epa-ng suppo…
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We should provide statically linked binaries for users who just want to use our application as convenient as possible. @stefanorf, @briehm I think somebody already looked into this issue.
If yes, coul…
mhoff updated
9 years ago