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The MS dataset is publicly available and comprises 21 3D scans from 5 subjects
each with T1w (voxel size = 0.82 × 0.82 × 1.17 mm3) and FLAIR (voxel size
= 0.82 × 0.82 × 2.2 mm3) MRIs. All scans are …
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2008 MICCAI MS Lesion Segmentation Challenge
MS lesion segmentation challenge 2008: The goal of this competition is to compare algorithms to segment the MS lesions.
Please download data from lin…
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In this issue, we describe the work done to manually segment MS lesions in the spinal cord on PSIR and STIR contrasts.
This work is pushed on branch `plb/m12_lesion_seg`
The segmentation predicti…
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Opening this issue to check if the Healthy Controls' (HC) lesion masks are empty (meaning that there are no segmented lesions on the masks).
This is related to this [comment](https://github.com/iv…
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As discussed in the meeting, we will check if SoftSeg can enhance our lesion segmentation model's performance.
To-do:
- [x] Train and test lesion segmentation with softseg
- [x] Update the releas…
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# Description
Given that we have multicentre MS 3T MP2RAGE data that includes the brain and spinal cord, and also that some models have been developed to segment MS lesions in the brain (robust even …
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Here is an issue to describe the aggregation of available datasets.
The dataset which are of interest for this project are:
- Labeled datasets
- canproco : PSIR and STIR contrast
- sct-testing…
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The data is stored in `duke/mri/basel/6900_nifti_20` and the segmentations in `duke/mri/basel/6900_20_lesions-PD`
The steps are the following:
- [x] A git-annex repo should be created :
- [x] T…
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First of all, thank you for releasing your dataset.
I was looking through the lesion segmentation images and couldn't help but notice that many
ground truth images are completely black, even thoug…
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2.5D Architecture --> patch extraction performed from three anatomical planes.
Currently, we are only using patches extracted from the axial plane, which is optimal for axial data (e.g. T2-ax, T2st…