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For some operations, we still need libsbml. Should convert them more =
seemlessly without go to/from files, if possible.
Begin forwarded message:
> From: Andreas Dr=E4ger
> Subject: Re: [jsbml-tea…
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Begin forwarded message:
> From: Lucian Smith
> Subject: Re: [libsbml-team] Errors during flatten
> Date: August 19, 2014 at 12:48:46 PM MDT
> To: "Chris J. Myers"
> Cc: Frank Bergmann , LibSBML …
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Hey, all.
I used jsbml-1.6.1, current latest version of jsbml, but I found the method, ASTNode.toFormula() fails to parse the formula.
To be specific, for testcase, I downloaded BIOMD0000000022.xml …
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With a lot of help, I managed to get this to build using nix: https://nixos.org. It built for me on macOS using
```
nix-build --pure sundialsTest.nix -I nixpkgs=https://github.com/nixos/nixpkgs-ch…
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I'd like to specify a Python environment where python-libsbml-experimental is required, and required to be equal to the version of python-libsbml (whose version would be determined by the requirements…
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There has to be an installable python pip package. Currently it is impossible to create a python `virtualenv` virtual environment which would provide the functionality of sbml2matlab. The reason is th…
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This is not the kind of behaviour that is expected from a getter; is it returning the original and keeping a copy?
Somehow the memory handling is not working correctly
```
import libsbml
asse…
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I installed libsbml and this library to try the sbml simulator from the binary distribution (http://fun.bio.keio.ac.jp/software/libsbmlsim/downloads/libsbmlsim_1.4.0_amd64.deb) but encountered the err…
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Hi,
I've been trying to install sybilSBML without any success.
I've installed libSBML without any problems with:
$ R CMD INSTALL libSBML_5.19.0.tar.gz
I'm inside a conda environment, so …
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### Simulation tool
### Simulation tool
---
id: vcell
version: 7.5.0.27
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.6.0.27/biosimulators.json
specificationsPatc…