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## Expected Behaviour
Unknown
## Current Behaviour
I am trying to re-create the clustered nr database currently featured on the BLAST site. The cluster step appears to stall after merging the…
cef61 updated
3 months ago
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## Expected Behavior
searching against MMseqs2 databases after clustering step
## Current Behavior
after mmseq2 db creation (giving a type nucleotide db) and clustering, it does not proceed due t…
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"MMseqs2 Version: 7e2840992948ee89dcc336522dc98a74fe0adf00"
## Expected Behavior
mmseqs easy-cluster --help
says that running this command
mmseqs easy-cluster /opt/mmseqs/examples/…
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## Expected Behavior
Summary: Running linclust or clust with a very big database leads to a heavy slowdown in the rescorediagonal part. Expected the job to continue much faster. It releases a warning…
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Hi, I am in the process of building a searchable database of antibody and T cell receptor repertoires (here, a "repertoire" is a set of antibody or TCR sequences from a single blood sample from a sing…
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I would like to be able to run cascaded clustering with explicitly defined sensitivity levels, and also disable the first Linclust step. Can this be done somehow?
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## Expected Behavior
not sure
## Current Behavior
cluster is stuck at prefilter stage for > 3 days
## Steps to Reproduce (for bugs)
Please make sure to execute the reproduction steps with newly…
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I've been using linclust and it is extremely fast. I'm wondering if I can just use this in place of easy-cluster for all of my clustering tasks. Are there any caveats to doing this?
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## Expected Behavior
i am doing a cluster process on 15 million seq, but i am stuck on rescorediagonal, watch with top command, i find it's not memory's issue since only 8G Ram is used, i use 128 thr…
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## Current Behavior
We are consistently receiving the following error:
munmap_chunk(): invalid pointer
leading to
.../linclust/sh: line 76: 2444 Aborted (core dumped) $RUNNER "$MMSEQS" "${ALIGN…