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Hi,
I am trying to replicate the analysis that I did with MDAnaalysis on cpptraj
```
import MDAnalysis as mda
from MDAnalysis.analysis import rms, align
# import nglview as nv
import warni…
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_I'll update as I get more information, but here is a very quick overview of the issue:_
Due to the use of non-optional mdakits as dependencies, the MDAnalysis package now technically depends on it…
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@cbouy is it worthwhile to rerun with MDA 2.4 — did anything important change in the rdkit converter?
cc: @IAlibay
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@yuxuanzhuang started planning the Molecular Nodes/MDAnalysis Blender hackathon session in [discord: #project-proposals: MDA/MN Collaboration](https://discord.com/channels/807348386012987462/11340272…
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Over the last 2 years or so we had discussions about how to represent the effort of all authors. One point was that we should replace the "all author footer" on every page of the docs, which looks lik…
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Currently, the ASE is used for loading coordinate, box size and element information. I wonder if it is possible to load the data through MDAnalysis.Universe?
The coordinate, cell, atom type can be ac…
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## Is your feature request related to a problem? ##
Code in analysis.waterdynamics does not behave like most of the analysis tools that ship with MDAnalysis.
There are [various inconsistencies](h…
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# Bug: no search results after adding new sitemaps
### If it is a DocSearch index issue, what is the related `index_name` ?
* `index_name`= mdanalysis
* index file [mdanalysis.json](https:/…
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Hello,
How can I install MDsvr with MDAnalysis instead of MDtraj?
Thank you in advanced!
Best,
Sergio
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I expect this to require changes to the theme -- opened #32.
Repos:
- [x] core: https://github.com/lilyminium/mdanalysis/tree/switch-docs-theme
- [x] user guide: https://github.com/MDAnalysis/UserGui…