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There has been a small amount of discussion about the BD Rhapsody barcode / sequence format (e.g. see [here](https://github.com/COMBINE-lab/salmon/issues/445#issuecomment-551083490)), but it would be …
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**Background**
Sometimes users need to register oligonucleotides containing randomized or "mixed" bases. It means that on the defined position a variant monomer could occur.
Variant monomer is a mon…
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MSID: 94245
Version: 2
Preprint DOI: https://doi.org/10.1101/2023.04.28.538649
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-hu…
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MSID: 99914
Version: 1
Preprint DOI: https://doi.org/10.1101/2024.05.20.594480
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-hu…
-
**Background**
Sometimes users need to register oligonucleotides containing randomized or "mixed" bases. It means that on the defined position a variant monomer could occur.
Variant monomer is a mon…
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Suggested yeast dataset of interest to me: Ribosome profiling data [GEO: GSE131176](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE131176).
From *Condensation of Ded1p Promotes a Translation…
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Hello, I am processing single cells obtained by SMARTSEQ. I have created a 3-columns tsv file with cell-id and the two read pairs (`samples`). I launched `kb count` like
```
kb count -t 8 -o $OUTD…
dawe updated
4 months ago
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For the quick generation of nucleotides I found https://wiki.pymol.org/index.php/Fnab with a mention to be available for version 2.3. I checked out the Open Source version but cannot find that command…
smoe updated
6 months ago
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Hi, I used the code recently :
```swga filter --min_size 6 --max_size 12 --min_fg_bind 1000 --max_bg_bind 500000 --min_tm 18 --max_tm 32 --max_gini 0.6```
And the log is:
```
/data/cm/software/mi…
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Hello,
with this message I want to refer to a paper called "PhIP-Seq characterization of serum antibodies using oligonucleotide-encoded peptidomes" from 2018 by Divya Mohan et al. They were using p…