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Hi,
First of all, thank you for this tool and the great work that has been done. I have started using LongPhase recently in a project of mine and I have been happy with the results and the performa…
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Hi - I'm using ratatosk 0.7.5 to correct nanopore long reads with some Illumina MiSeq data. Things seem to run fine for a few hours, and then terminates on the 2nd pass with
FileParser::FileParser(…
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I've been using FMLRC but would love to give Ratatosk a go. Unfortunately, I've run into a compiling error.
[ 55%] Building CXX object src/CMakeFiles/Ratatosk.dir/Common.cpp.o
/home/travisan/publi…
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Hi,
I have four more questions.
FYI, a single memory node approach on a PBSpro environment.
module load ratatosk/0.1-foss-2020b
Script: Ratatosk correct -v -c 16 -s /home/SL_Reads_R12All.fq.g…
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Hi all,
thanks for the tool! We are currently testing it in the context of a fungi hybrid assembly pipeline w/ various tools/polishers.
One thing I noticed:
```
git clone --recursive https:…
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Hello!
What is the run time estimation for the correction of the long reads? I used the default command for running Ratatosk `Ratatosk correct -v -c 90 -s short_reads.fastq -l long_reads.fastq -o o…
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Hi,
Thank you for the great program.
Just want to make sure about the input format.
Based on the manual, it is recommended to use Illumina PE reads to correct PacBio or ONT reads.
Given the circ…
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Hi,
After finishing the corrected of reference-guided reads, I noticed that many "invalid" characters have been introduced that are problematic for downstream analysis. The only reference I noticed t…
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If one has a lot of bins (say >2000) because the reference genome has a lot of small scaffolds, but scaffold L50 is say ~10 (for a Hi-C chromosome scale mammalian genome with many, small unplaced scaf…
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Hello!
I'm trying to run the latest version using the four steps method, but when running the first index step, it writes to disk an index file with the name `H2009BL_corrected.index.k63.fasta`. Is…