-
**1. What were you trying to do?**
VG stats on 3 files after aligning them using vg giraffe and the T2T-CHM13 reference.
**2. What did you want to happen?**
vg giraffe to use paired-end mappi…
-
Hi,
I am trying to run CRISPR-Correct with just one fastq file (R1 only). According to the readme it should be possible to do so.
How should I define the fastq_r2_fn parameter as it seems to be re…
Edert updated
12 hours ago
-
### Describe the bug
"--WatchStaticMappings true" command doesn't respect new files copied. This is a bit annoying in docker in docker configuration where I can't bind mappings using WithMappings() a…
-
As part of the snomed mapping problem #110 we need to find a good way to formalize the commcare inputs.
Basically commcare defines forms which capture a bunch of values. We need to capture all the po…
-
It looks like the `deno check` command isn't able to deal with wildcard mappings in `package.json#exports`.
```sh
# (formatted for readability)
error: Uncaught Error: Failed resolving package con…
-
Can medaka generate a consensus that extends from the soft-clipped 3'end of ONT reads mapped to a reference?
E.g. for B-cell repertoire or T-cell repertoire transcript sequencing with ONT, one can …
-
Per conversation with some folks at CDPHE, an aggregation depends on the exact alias map that went into it. We ought to find a way to store this information usefully.
In-python, it should be an att…
-
Hello
Thank you for developing these fantastic tools!
I'm attempting to map short paired-end reads to a structural graph and call variants, similar to VG but I prefer how I can determine the s…
-
Hello,
I am aligning 5210 RNA-seq reads to all the predicted ORFs from Arabidopsis thaliana. STAR finishes successfully without any issues. This is how my command looks like:
STAR --runThreadN 50 …
-
### Describe the feature
Parameters are very limited to `BaseSolidityParameterType`, which only supports `number | bigint | string | boolean`. We should support nested parameters as well. The `Solidi…