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Currently, the sources and the selectors used are hard-coded. An improvement is to read a CSV file with the `source`, `selector` values in it.
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In instructions, you illustrate mapping SE reads.
Are SE required for pipeline?
I have tried mapping with PE reads and with these settings, and the two reads map to "different" locations, and so are…
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### Description
when loading parquet files, it would be nice if polars could trace which file each row came from
something like
```python
df = pl.read_parquet('*.parquet', with_source_column=Tru…
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There are some issues with this training that I collect here to fix step-by-step.
* In the preprocessing part, all fastq outputs go into multiQC, but since multiQC only shows one output for identical…
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Please update documentation to explain that in order the response code HTTP status code directly, you can do so only by catching the `ApiResponse` exception, which is raised when the API call i…
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Dear List,
i got an issue with LevelX 6.1.7 ( ) used in conjunction with FileX + ThreadX on an STM32H563 connected to a serial Flash via a custom driver.
**Describe the bug**
I somehow manage…
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Hi TREASMO team,
paper looked really cool! So I wanted to try and run on some of my own data and the code provided:
rna = ad.read_h5ad('data/HSPC_Muon_RNA.h5ad')
atac = ad.read_h5ad('data/HSPC_Muon…
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I encountered a problem when trying to run fcirc on one of the samples from your publication (total RNA of COLO-829 melanoma cells). I keep getting an error with mapping the reads to transcription, bu…
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In a lengthy [Zulip discussion](https://rust-lang.zulipchat.com/#narrow/stream/136281-t-opsem/topic/Interaction.20of.20Strict.20Provenance.20and.20.60mmap.28.29.60), it was discovered that there are m…
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After a talk with @shiraz-shah, we should investigate if we can estimate the abundance more accurately.
He recommended using msamtools with 80% query coverage, 95% id over 80 bp, and using `msamtools…