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Title: Learning the language of viral evolution and escape
# General Information
## Please paste a link to the paper or a citation here:
Link: https://science.sciencemag.org/content/371/652…
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Title: Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa.
# General Information
L…
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I was able to use Pre-trained BioGPT in accordance with the use case.
Could you give us an example code of using Pre-trained BioGPT-Large?
I tried this code.
```
import os
os.chdir('/home/***…
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# **Automação de análises RVOP/RPIP/VSP**
## **Obtenção de dados**
### **CZID**
Importação dos FASTQ no [CZID](https://czid.org/), geração de dados e download da planilha ``combined_sample_ta…
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Hi,
I analyzed metagenome data including the SARS-COV2 genome. I tried to browse this data, but SARS-COV2 was expressed as "other Root" by Krona. Is there anything I can do for browsing this virus in…
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As outlined in https://docs.google.com/document/d/1cKcQfx8X8uAXR6JF96jqZO8OCpwwkYatnxSIyVXvYbo/edit# , we'd like to start using hexastore-like method to encode triples in key-value Zenodo annotations.…
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Hi Daniel,
I have a sample where Kraken2 reports a hit allegedly originating from SARS-CoV2. It's probably a false positive, but that is not the point. The point is that gridss.kraken.ExtractBestVi…
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It seems only the feature start position is changed for subsequent features in the gff. Example is for R1070_B01_4802200553, an omicron sample.
### Original gff
`##sequence-region MN908947.3 1 299…
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* There are 16186 cases where a term has the proteoform notation on both the definition and the PRO-proteoform-std lines.
* There are 944 non-obsolete cases where a term has the proteoform notation o…
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* http://socialmobility.covid19dataresources.org
Social distancing is an important component of the response to the novel Coronavirus (COVID-19) pandemic. Minimizing social in- teractions and trav…