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Hi all, I've been reviewing the code and I see that the pipeline scripts are tightly coupled to their execution in `slurm` (of course this is a pipeline for this kind of clusters). We are doing some t…
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This is a pretty simple task. Ruff finds some anti-patterns in the code that should be updated. Most of the time, it directly gives hints. You can run Ruff with pre-commit yourself via ` pre-commit ru…
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The slurmctld operator relies on `scontrol` for various operations such as triggering the reload of the Slurm configuration without being required to hard restart the slurmctld service.
It can be a…
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How can legion be executed on k8s cluster?
Is there an example yaml available that defines on how to spin up the necessary pods?
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# Short Description of the issue
Running an Argo workflow with a pod step affinity set to InterLink Slurm node, will break with this error
```
XXX:~/.interlink$ kubectl -n argo-workflows …
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**1. What were you trying to do?**
I tried to perform vg construct on each chromosome
```vg construct -C -S -R ${chrs[SLURM_ARRAY_TASK_ID]} -r $ref -v ${split_chrs}/${chrs[SLURM_ARRAY_TASK_ID]}_…
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As there are many different job schedulers used on HPC, it would be interesting to know to what extent the work here could be generalized to apply to other job schedulers to cover more use cases. For …
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help help!!!! Thanks!
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Trying to use this the first time:
$ python main.py --export_data true
SLURM job: False
0 - Number of nodes: 1
0 - Node ID : 0
0 - Local rank : 0
0 - Global rank : 0
0 - World…
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I was trying to run the cow-job after setup environments by the following command:
`vagrant up && vagrant ssh k8s-master`
`kubectl apply -f examples/cow.yaml`
but when I run `kubectl get pods` m…