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Hi,
I would like to set synteny view between my species (Organism A) and 30 other species (Organism B). However, it seems that the synview will work only if the gene fetures of both the A genome an…
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### Discussion or Question
I am trying to search for Tripal 4 content, e.g. genes but Tripal content doesn't show in the site search. How to enable search options, modules for Tripal 4?
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We are currently not consistent with when we use TripalLogger for errors and when we throw exceptions. We should make a plan with a small amount of documentation to ensure this is consistent throughou…
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# Core Tripal 4 Development Task
## Branch Name: tv4g1-issue1414-[name of field you are working on]
This issue is providing an organization spot to upgrade all the core Tripal fields. Please com…
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## Feature Request/Discussion
We have noticed in Tripal 3 that infraspecific type + name are not always remembered by developers. It would be great to create a core Tripal Field that displays the s…
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# Core Tripal 4 Development Task
**Not Yet started -anyone can tackle any one of these :-)**
## Branch Name: tv4g0-issue1522-dependencyInjection
There are a number of places in the Tripal 4 c…
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Many pages in legacy PB are linked from the tools panel of PB-Jekyll dev site. Some of these need to be ported to the jekyll site as HTML pages.
(Links have to be individually checked and decided as…
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### Problem/Motivation
Currently, when a long process needs to be run, T4 displays a message telling the user to launch the job using drush on a shell (just like previous versions of Tripal).
Ther…
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As mentioned in tripal/tripal#1341, the new Tripal BioDB API provides a more Drupalized way of cross-schema querying for databases. The ChadoRecord + ChadoSchema classes were originally developed to a…
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# OGS remapping
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# manual annotation remapping
- [ ] request whole-genome alignment
- [ …