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Start in June
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### Description of the bug
I am running Sarek using a custom reference and dbSNP version on a SLURM cluster. Each invocation of HaplotypeCaller produces a copy of dbSNP in the process's working direc…
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E.g. snic2022-6-145, is 1200 in plot but only 22 in list. Investigate.
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Add information about using Rclone on Uppmax on the topic "data transfer".
https://docs.uppmax.uu.se/software/rclone/
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ToDo before 2025!
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## Structured standard
After multiple different approaches i am now confident in an approach. To create a set standard, i will redo the scripts so the same analysis and structure is withheld unregard…
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Use workshops or community calendar: https://github.com/coderefinery/calendar/blob/main/calendars/workshops.yaml
- [ ] - [ ] https://scicomp.aalto.fi/training/scip/ttt4hpc-2024/
- [ ] https://ssl.eve…
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**Command run:**
```nextflow run -params-file params.yml -c custom.config -profile uppmax /proj/rosling_storage/AMF/b2017181_nobackup/merce/try_RepeatDefeaters/RepeatDefeaters_ccandik```
I tried t…
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I've updated the rule for creating issues at https://uppmax.github.io/programming_formalisms/project/issues/#our-project to only create issues for project-related things. I feel this is a better rule,…
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_Team :yellow_square::_
We usually use docker for easy setup for deployment and reproducibility across team members. Some recommendations about this could be in the document or in a separate docume…