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In order to explore transcripts information related to each variant, especially to calculate scores, need to create a "transcript view". It can be another table or a view (e.g. "transcripts"), which e…
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AnalysisResult now holds the analysisId rather than the full Analysis record.
https://github.com/ga4gh/schemas/pull/525/files
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### Current Behavior
There may be discrepancies between the annotations generated by the Variant-Linker tool and the VEP online version.
### Proposed Solution
- Select a set of representative…
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Currently, we do a get_or_create in here ```annotation.annotation_versions.get_variant_annotation_version``` which is triggered by visiting annotation pages
Better to do in management command and/or …
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**Is your feature request related to a problem? Please describe.**
Currently flags can be used to track the status of a variant. While this is useful to mark interesting variants. The history of chan…
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### Context
Variants with a positional match value will lead broken matches that can't be fixed with lint rules.
Variants have a match array. The order of the values in the match array determines ho…
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Dear professor,
Thanks a lot for supplying such a useful tool.
I am here want to ask a question.
here is a 29 base deletion variant, but the annotation is 25 base, is there any reason for this? th…
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anhima.var.n_ti_tv
anhima.var.plot_filter_rate
anhima.var.plot_annotation_distribution
anhima.var.plot_ann_joint_distribution
anhima.var.plot_ann_ti_tv
anhima.var.plot_ann_joint_ti_tv
anhima.var.plot_…
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### Description of feature
It's been a while since we looked into whats available in the field of SV annotations
- Short SVs under 1 kb,
- Mobile element calls from sniffles
- Classification of …
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I have few upstream gene variants. But looks like there is no such/similar annotation in the `variant_classification_filter` column. So, not sure what annotation to put there?
any suggestions?
I a…