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When I run FitHiChIP everything runs smooth up to a certain point where a couple of (probably reated) error messages occur. Here is the log:
> ===>>> using bias regression --- modeled fit_spline_…
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Hello,
I am using hg19 genome (by `addArchRGenome("hg19")`) and noticed that Ig or TCR genes are not included in the ArchR project or ArchR Browser. They are annotated distinctly as `IG_V/D/J/C_gen…
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I'm working on maintaining a local version WashU genome browser here in UT Southwestern.
I've install the legacy version and the new version as well.
In the new version, I cannot save a session an…
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Thanks for updating the WashU Epigenome Browser. However, I found that the new version of the browser did not support to save a track as weblink as the old version did. Therefore, I cannot add the tra…
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Hi @lidaof
I want to build a local custom WashU Epigenome Browser. However, when I run "npm install or npm install --force", I got many errors. Please see the details below.
root@sheep-Vostro-20…
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Hi,
After successfully run epilogos on the test data, I tried computeEpilogos_minimal.sh on my own data using the S3 mode, but got only the statePairs.txt for each chromosome, no observations.starc…
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Hi @lidaof
I want to build a custom genome using Washu just like https://epigenomegateway.readthedocs.io/en/latest/installation.html mentioned. However, when I Run "npm run setup", I got an error "ev…
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I have been trying to visualize Chromatin interactions on the Epigenome browser for a region of interest, however as soon as I select 'VR mode' in Settings the browser freezes and then the page crushe…
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Hi @lidaof
I installed a local browser and deploy MongoDB to have my own backend API following the steps on https://eg.readthedocs.io/en/latest/installation.html
I then did empty the `AWS_API`…
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Hi,
One of the labs here have prepared 'hammock' tracks that were previously supported by the legacy WashU epigenome browser. However, this format doesn't seem to be supported by the new browser. …