-
---
id: libsbmlsim
version: 1.4.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_LibSBMLSim/2a05dc6cab2bca141f42a538f0a7e36ed343c1cd/biosimulators.json
specifications…
-
---
id: gillespy2
version: 1.6.2
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_GillesPy2/827e4cd608fb83f431da29de33b729d68de7a5ee/biosimulators.json
specificationsPa…
-
---
id: smoldyn
version: "2.66"
specificationsUrl: https://raw.githubusercontent.com/ssandrews/Smoldyn/6cc2334d15dbac1b16499aaa7630bd63deaf875b/biosimulators.json
specificationsPatch:
version: "2.66…
-
---
id: gillespy2
version: 1.6.2
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_GillesPy2/a518df5d5735fd33519fea77ece0d249217d8226/biosimulators.json
specificationsPa…
-
---
id: smoldyn
version: "2.66"
specificationsUrl: https://raw.githubusercontent.com/ssandrews/Smoldyn/289387a9321792b20fe5d0aaefb8e3cf011adc45/biosimulators.json
specificationsPatch:
version: …
-
---
id: smoldyn
version: "2.65"
specificationsUrl: https://raw.githubusercontent.com/ssandrews/Smoldyn/289387a9321792b20fe5d0aaefb8e3cf011adc45/biosimulators.json
specificationsPatch:
version: …
-
---
id: libsbmlsim
version: 1.4.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_LibSBMLSim/97b4bac597620acbfb18b4768f2fccdebb03fadd/biosimulators.json
specificat…
-
- [x] Refactor simulators
- [x] AMICI
- [x] BioNetGen
- [x] BoolNet
- [x] CBMpy
- [x] COBRApy
- [x] COPASI
- [x] GillesPy2
- [x] GINsim
- [x] libSBMLSim
- [x] MASSpy
-…
-
https://arxiv.org/abs/2106.00844
This covers more "advanced" rules such as:
- The network of model sources can't be cyclic
- List of curves must have length >= 1
- Uniform range must have at lea…
-
We suggest to depricate these terms, because the rather describe the update policy of the model than the actual simulation algorithm.
Reported by: dagwa