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On Mac OsX with a fresh Fiji.app (without JRE, local Java version 1.8.0_121):
1) launch Fiji.app
2) Help > Update ...
3) (in the update dialog) Manage update sites
4) check OMERO 5.4
5) close Fij…
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The test suite can be extremly slow. [Example](https://copr.fedorainfracloud.org/coprs/davidsch/bout/build/681720/)
The reason is that mpich, and also openmpi, perform extremly badly in the case of…
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The scaling factor of the drift vector, used in importance sampling, may deviate from the intended implementation of "eq. (34) *tau in Umrigar, JCP 99, 2865 (1993)". The deviation happens whenever the…
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@stevenzhangdx I am starting on this, but have added you as an observer. May hand over to you for testing/etc.
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A recent discussion on [neurostars](https://neurostars.org/t/consequence-of-using-single-float32-or-double-float64-precision-for-saving-interpolated-data/224) got me thinking about how we convert DICO…
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I found that the S1 per-PMT map has a binning issue around `z=0`. The current map is generated with only 10 bins in z which causes the AFT map to have a continuous LXe/GXe transition instead of having…
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You will see a starting point in `continuous_time_methods\matlab\tests\discretize_univariate_diffusion_test.m`
The goal is to fully test the `continuous_time_methods\matlab\lib\discretize_univariate_…
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Hierarchical Bayesian version of drift diffusion models
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### Checklist
- [x] Pull svn repo into git repo as development branch.
- [x] Rename `NEKCEM` as `NekCEM`. This way it will match with @Nek5000.
- [x] Add `README` and `LICENSE` file (BSD 3-clause…
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Base this off of #8, though it could easily be done with the LCP.m based one.
Essentiallly, just do the finite differences with a fixed, but non-uniform grid. The key step will be that `dx` is a v…