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Hi,
I'm trying to use your code to estimate prs trajectory for GWAS, and I found that the rent+ on a single loci took nearly one hour, which means that analyzing all 1700 locus would take 1700 co…
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While developing [the web app for manual curation](https://github.com/EBIvariation/trait-curation), we stumbled upon a rare scenario where a given ClinVar trait is _purposefully_ mapped to two distinc…
tskir updated
3 years ago
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Trish will need have meetings with Abayomi, regarding How the things below work, where they are and ... so there can be smooth operation of the Software and Hardware Infrastructure afterwards
1. Co…
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https://mp.weixin.qq.com/s/UUSGt-3WELmhQwB6LhPUeA
ixxmu updated
3 years ago
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https://mp.weixin.qq.com/s/UUSGt-3WELmhQwB6LhPUeA
ixxmu updated
3 years ago
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We need to go through the the [v1.10.1 sync log](https://github.com/nf-core/tools/runs/929290398?check_suite_focus=true) and see what to fix / improve.
Final summary:
```
INFO Finished. S…
ewels updated
4 years ago
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For the latest GWAS freeze, let's compute the followings and tabulate it
- Lambda GC across different frequency bins
- LD score (heritability estimates)
- LD score intercept
- Number of hits
- …
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- One quick way to do it is to just look at the phenotype info table and sum up Ns across 7 pops.
- The correct way to handle this is to check the Metal log files and sum up Ns across populations tha…
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Hi,
I'm interested in running a GWAS analysis and in controlling for population structure by including genotype principal components as covariates in the model. Following the tutorial here (https:/…
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Hi, I am trying to run some basic QC on a 1KG dataset with ~25M variants and 629 samples and I'm having issues making this work efficiently with Glow. These same operations take 35 seconds with PLINK…