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IsobaricAnalyzer (and ITRAQAnalyzer) throws an Exception when supplied with the spectra I have mailed to the mailing list. (Tried to upload here but github "can't process that file".)
My commandline …
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Dear OpenMS Community,
We are currently testing the FTLKD in metabolomics workflow. While it seems to do an overall good job on the feature linking and on the ressource side, there are problems ari…
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User defined mods in `unimod.xml` appear as `unknown modification` in the `MSGFPlusAdapter` search results.
Running MS-GF+ from the command line with a user defined mod `XYZ` in `msgfplus_mods.txt`
…
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Hi,
Saturation of the detector in mass spectrometry is quite common in metabolomic. Obviously, these saturated MS1 or MS2 features cannot be compared properly between samples. Decreasing the sample c…
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To have a separate release process, versioning etc.
It might be a bit confusing for users at first but I think this will make the release much more manageable.
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Currently layers in TOPPView are displays with the last loaded layer on top. There are times when it is helpful to rearrange which layer is on top.
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Hello, I am deconvoluting inclusion-list and targeted RAW files for top-down proteomics. FreeStyle 1.8's "Xtract All" feature creates a new, deconvolved RAW from a larger input RAW. Unfortunately I …
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https://github.com/OpenMS/OpenMS/blob/a37ef4ff8daf7dec4492f12443aab430e2a7a5d6/.github/workflows/pyopenms-wheels.yml#L138
Should be something like _pyopenms*.pyd on windows.
And probably _pyopenms…
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For consensusXML input the number of outputs depends on the contents of the input.
In order to automatize this step it would be great to just specify a prefix of the outputs.
For instance, one…