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We would like to add Drosophila melanogaster data to work with Julie Aspden and lab, starting with data from [Extensive translation of small Open Reading Frames](http://dx.doi.org/10.7554/eLife.03528.…
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It has been mentioned that the global placer is non-ideal. I want to create this meta-issue to track what improvements are needed to improve the quality of the results.
What tasks can we complete t…
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Suggested yeast dataset of interest to me: Ribosome profiling data [GEO: GSE131176](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE131176).
From *Condensation of Ded1p Promotes a Translation…
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Hi!
By using this config file: https://github.com/riboviz/example-datasets/blob/main/fungi/saccharomyces/Weinberg_2016_RPF_1_sample_cerevisiae_CDS_w_250utrs_config_2-1.yaml
The resulting BAM fi…
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### Describe the bug
untar [fakeram-no-clock.tar.gz](https://github.com/user-attachments/files/17012789/fakeram-no-clock.tar.gz)
Run:
```
./run-me-top-asap7-fakeram.sh
```
```
OpenROAD …
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Hello,
I've been playing with StringTie for the past few months and I've come to believe that - with the strand-specific RNAseq data that I have, at least - the trimming of exons at drops in coverage…
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### Describe the bug
I was trying to dump a report using below command from shell in a text file.
```
report_check_types -max_delay > test.txt
```
It creates the text file but does not genera…
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I'm seeing a 2-3x increase in parasitic capacitances when testing the old RCX tables vs the new ones. I know the old ones are suspect, but I just wanted to make sure this large an increase was expecte…
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orfs docker image v3.0-1132-g5acdf457 includes the CTS fix as well as PDN update that might reduce the ODB size. Update megaboom to use this version.
Mods to make:
1. Update MODULE.bazel to:
…
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This feedback is for : https://armleo-openlane.readthedocs.io/en/merge-window-4/docs/source/openram.html
1. Simplify intro to:
This guide covers the RTL-to-GDS flow using OpenRAM cells and many m…