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Hey!
I just came across this really great resource! Couple small suggestions came to mind that could improve the user experience, so I thought I would file them..
The first suggestion is to make…
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Those get redirected to the general home page of the Chemistry program of Queen Mary University of London - that doesn't help define terms.
https://www.qmul.ac.uk/undergraduate/coursefinder/course…
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Currently, the FTP access for cellosaurus data provides the most recent versions of the data.
For reproducibility and provenance purposes, it might be helpful to include sub-folders with each new v…
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The data used in the module `Bio.SeqUtils.IsoelectricPoint` are based on articles in the 1990s — 30 years ago. Can we cite more recent literature, e.g. [Kozlowski 2016](https://doi.org/10.1186/s13062-…
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* GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity
comment: Includes EC 1.7.99.5.
synonym: "1.7.99.5" RELATED []
-> 1.7.99.5 has been transferred to EC:1.5.1.20 (and this is correc…
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Spun out from https://github.com/biopython/biopython/pull/2717#issuecomment-589177971, [`vulture`]( https://github.com/jendrikseipp/vulture) allows the detection of putatively unused code. I guess cod…
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Dear the GeneOntology team,
The EC links on the following entries are broken:
http://amigo.geneontology.org/amigo/term/GO:0102584
http://amigo.geneontology.org/amigo/term/GO:0102585
Many thank…
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This is a spin out from #2008, where we have agreed to adopt the black code formatting tool for Biopython:
https://github.com/psf/black
That issue focused on applying black to the main code base…
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As of Biopython 1.76 (released December 2019), we are dropping Python 2 support and focusing on Python 3.6 or later. This means we no longer need our (internal) Python 2 vs 3 compatibility library ``B…
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I was curious how you were collecting the KOs and connecting it to the ECs?
Since I wanted both information, I found it quite useful that eggnog mapper gave it by default, however by looking at a lin…