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Hi - been using the `maturity()` function to get length at maturity for a list of species (names validated for all). Problem is that if it fails for a single species in the list, the whole list fails.…
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@Dengaloo @FIN-JBarile
Today, I ran a test with the bridge between FishBase/SeaLifeBase and OSMOSE, where I requested parameter estimates for an OSMOSE model of the Iceland Shelf/Sea.
I noticed th…
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List of up to 100 species provided for an order will be ranked by decreasing data richness.
The species will be extracted from the fishbase api.
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The OSMOSE config file "osm_param-species.csv" provides an estimate of egg size (in cm) for each of the focal functional groups represented in the OSMOSE model.
Egg size is a parameter that can dire…
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Currently, a tabular file is produced by GloBI that include interaction pairs and associated provenance. Only a single taxonomic id (the first one) is included, leading to various taxonomic ids (EOL, …
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fishbase.org (and sealifebase.org) is now available through fishbase.ropensci.org . Suggest to link to diet, predator and food items provide by these rich data sources.
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@sckott What do you think about having an option for pretty json returns? Often I find it's convenient to check something quickly by just entering the rest call in the browser, but of course the dens…
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Attached are the files with the changes (addition / deletion of columns & renaming). Also attached is a file describing all the changes.
[database changes.xlsx](https://github.com/GoMexSI/interaction-…
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load_taxa loads a cached copy by default, somehow seems like when loading from cache it's using fishbase regardless of the server argument.
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as discussed in https://github.com/jhpoelen/fb-osmose-bridge/issues/97#issuecomment-284465610 .
Without the ```eggs``` table, estimates for the following parameters of the "osm_param-species.csv" c…