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Check whether or not alleles in GL string are found in Common Well Documented (CWD) alleles (http://igdawg.org/pubs/cwd200_alleles.txt) for ALL loci (A, B, C, DPA1, DPB1, DQA1, DQB1, DRB1, DRB3/4/5).…
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```
Create tool to reinterpret a gl resource identified by a URI from one IMGT
database version to another IMGT database version.
```
Original issue reported on code.google.com by `mhe...@nmdp.org` …
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It seems that indels are not getting parsed correctly, resulting in the AF and dbSNP lookups to fail.
For example, the VCF file contains:
`chr11 61165731 . C CA`
This results i…
buske updated
9 years ago
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The filtered allele is missing a deletion in exon 2. Most likely this bug affects other alleles with expression changes (insertions and deletions in coding regions).
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Add another step to the end of the pipeline that will look at the coverage levels for each region in a sample, and assign a coverage score.
## Score thresholds
Each region has a set of key amino acid…
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In the 3 Sep 2014 run, the `nuc_variants.csv` file has over 11 million lines, and we are inserting over 5 million of those in the database within a single transaction. The upload took an hour.
After d…
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Create an HLA diagram and document it
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Migrated from [rt.perl.org#23858](https://rt-archive.perl.org/perl5/Ticket/Display.html?id=23858) (status was 'resolved')
Searchable as RT23858$
p5pRT updated
17 years ago