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I've been trying to build TRAM models for a "toy" 9-state landscape from Monte Carlo trajectories that changes with pH. The idea is that we could get lots of productive sampling of transitions at low…
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Is there any chance that the multichain DREAM sampler is re-implemented in pymc? There was [once a version for pymc2](https://github.com/jsalvatier/multichain_mcmc), but its not working any more.
maahn updated
6 years ago
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In, the past, we've permuted hetnets via the hetio package. We have also [explored](https://thinklab.com/d/136) a Cypher implementation. The method we use is called XSwap as described in:
> [**Rand…
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I see in your code that you have hard-coded lists of initial parameters for the scipy.optimize non-linear solver used in curve_fit. I have had good success using a genetic algorithm named Differentia…
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release estimate: mid-august
expected:
- new packages:
- python-3.6.3, python-3.5.4
- spyder-notebook, spyder-terminal, spyder-reports
- Vitables for Qt5.5+, moviepy, brotli,
- da…
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Hi,
Would the Figaro project benefit from a scalable, distributed MCMC implementation? Spark seems to be a natural candidate for this.
This kind of work has been done using PySpark on pymc: http://b…
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Reviewer: 3
Comments to the Author
Review of Zhi et al "Deconvolution of multiple infections in Plasmodium falciparum from high
throughput sequencing data"
This paper describes how to infer t…
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In the recent development version of BayesFactor, the column names when estimating MCMC chains appear to be gibberish. This is likely related to richarddmorey/BayesFactor#91 (@jonathon-love)?
d…
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release estimate : end-october 2017
features:
- WinPython-3.6 is the default download
- matplotlib-2.1.0, spyder-3.2.4, scikit-learn-0.19.1, pandas-0.21.0
- updated notebook experience: Ipython-…
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There is no explicit documentation of the `hakaru` command right now. What should be included on this page?