-
```
Any time the output files need to be determined at run time (such as with
@split and @subdivide), when a job starts, the files *currently* present that
match the output's regular expression are …
-
**Issue by [Wikinaut](https://github.com/Wikinaut)**
_Mon Sep 7 18:56:47 2015_
_Originally opened as https://github.com/fritz-hh/OCRmyPDF/issues/120_
---
A few PDF input files (**which were alread…
-
```
The latest code in the repository is 2.4b1, but there hasn't been a 2.3 release
yet. The documentation has been for 2.3b1 for a while.
```
Original issue reported on code.google.com by `tyler.fu…
-
This is from a fresh install, apps and databases verified correctly, running the suggested command from Install.rst
``` python
(pathdiscov)bash-4.1$ pwd
/home/AMED/michael.panciera/projects/pathdisco…
-
```
What steps will reproduce the problem?
0. Using the current 2.3 codebase:
1.Run a pipeline step using @transform (ie:
@transform([align_to_viral,align_to_bacterial],suffix(".cat"),".qc")
2.Mak…
-
```
I've been able to install ruffus 2.2 using pip, but trying 2.4beta3 gives an
error (easy_install still works fine). Could there be some packaging issue
here?
Installing in a virtualenv, the e…
-
Ruffus ( https://github.com/bunbun/ruffus ) provides support for building and running computational pipelines with multiple stages. It supports multiprocessing and DRMAA. They do use `multiprocessing.…
-
```
Command line parsing code for Ruffus scripts should be put into the library.
from Martin Goodson
```
Original issue reported on code.google.com by `bunbu...@gmail.com` on 11 Mar 2011 at 4:37
-
Need to support gzip input files
- Both .fastq.gz and .sff.gz
-
```
I tried out the latest (97518ac8f0e0) version of ruffus and came across a
problem with the sqlite history file (traceback below).
Our system makes uses the Lustre filesystem and creating sqlite d…