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[*Please include a short description of problem here*]
When executing `TranslateSBML` with one of the test models (Ec_iAF1260_flux1.xml) it produces an error for what it seems to be a hard coded pa…
pcm32 updated
7 years ago
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Highly similar to the problem described here https://groups.google.com/forum/#!searchin/cobra-toolbox/gurobi/cobra-toolbox/ZxAVYQorrqQ/GjKFYSgLJ4MJ
When gapFind uses solveCobraMILP it fails because s…
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I have been reading through the source code, but I might have missed this.
For version control of YAML files, key ordering needs to be deterministic or random changes in key order will look like in…
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I am having great difficulty getting this tutorial to run for me. I am using MATLAB 2015b on Mac OSX El Capitan. I cloned the master repo to install it fresh on my system. Since fastFVA requires CP…
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Exceeded slow_query limit (2.0 > 2) in mysql:
INSERT INTO card_legality (format_id, card_id, legality)
SELECT 34, bq.id, 'Legal'
FROM (
SELECT
`u`.`id` …
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For example, consider model_M with a large scalar M for unknown bounds:
``` Matlab
model_INF = model_M;
model_INF.lb(model_M.lb ==-M) = -inf;
model_INF.ub(model_M.ub ==M) = inf;
```
The out…
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#### Problem description
I am currently reconstructing a metabolic model, for which I am adding [confidence scores](http://www.nature.com/nprot/journal/v5/n1/full/nprot.2009.203.html), [comments](htt…
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Hi All:
I hope this is not a rehash of a previous conversation, but I could not find it, so here we go :)
Can we support non-integer charges in SBML / FBC? Right now in [sbml3.py](https://github…
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In lines 38,39,51,52 of updateCobraToolbox.m should be = instead of ==
This prevents updating CTB from matlab. Correcting the code makes it work but still can't update because it complains that there…
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Hi,
I am using Cobra together with parallel toolbox, and the standard in this setting global variables do not get passed from the MATLAB client to the workers. Thus, in every thread the global variab…