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**Submitting author:** @TomKellyGenetics (S. Thomas Kelly)
**Repository:** https://github.com/TomKellyGenetics/graphsim
**Version:** 0.1.2
**Editor:** @majensen
**Reviewers:** @rcannood, @corybrunson
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Dear,
Thanks for this amazing tool!
I was trying nichenetr. I based myself on a bulk RNA seq dataset to find potential ligands. I wanted to know which could be the target genes of these ligands in…
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Hi there,
thanks for the great package. It makes it very easy to run the complete SCENIC workflow.
I have SCENICprotocol setup on an HPC running SLURM, singularity (aertslab-pySCENIC-0.9.18.img…
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arXiv论文跟踪
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MOR signaling pathway
Synonym morphogenesis Orb6 network
def
Signalling pathway that regulates interphase polarized growth and cell separation at the end of cytokinesis through activation of t…
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add
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GO:0044068 modulation by symbiont of host cellular process
as a…
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Hi Seurat Team,
I'm trying to perform downstream GRN inference (using BigSCale2) on Seurat v3 integrated data (from different tumour samples). This requires 'raw' reads as input, so no negati…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/cbiagii/CeTF
Confirm the following by editing eac…
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Hi all,
My current problem is trying to identify potential gene regulatory networks involving transposable elements (TEs) using 10 samples and rnaseq count data. Currently I have performed a correl…
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Dear Drs. Hannah Pliner and Cole Trapnell,
Is there "data(gene_annotation_sample)" file for hg38 in cicero in step of Constructing cis-regulatory networks? Thank you so much.
Best,
Qi