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In GSE92742, GSE92742_Broad_LINCS_gene_info_delta_landmark.txt.gz has the gene SRSF8. However,
SRSF8 doesn't show in the GSE92742_Broad_LINCS_gene_info.txt.gz. Could someone tell me why the SRSF8 is…
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Given that we create a single CSV file for spherized in this [notebook](https://github.com/broadinstitute/lincs-cell-painting/blob/94bfaeeab0d107beac262b4307aa6e9b783625fa/spherized_profiles/spherize-…
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Hello, when I was running the r script: **main-ctrpv-lincs.R**, I encountered the following error "cannot open file' **DATA/lincs.csv**': no such file or directory", but I didn't see this file in the …
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@shntnu - I remember you mentioning that we have another batch of Cell Painting data for this project. Can you point me to where this data lives?
We should work towards getting this data on here an…
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Hi,
I want to use Martini 2.0 with polarizable water model ( doi:10.1371/journal.pcbi.1000810 ) on OpenMM-7.6.0. However, when I tested the system consisting of 5000 water beads on single-precision…
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We need to finalize authors for the version 1 release of this repository.
The authors should be those involved in the LINCS Cell Painting data creation. This means individuals involved in:
- fun…
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Talking to Mattias I noticed that there are some holes in terms of explaining what happens to get to the consensus data.
1. It does not become clear anywhere that 'mad_robustize' is the way of nor…
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In #63 I add spherized profiles for batch 1 and batch 2 LINCS data. Here is a birds-eye view of what the profiles look like:
### Summary
It is hard to determine from this view exactly how much t…
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we have made substantial progress in pycytominer since version 0.1 release. We need to update the `environment.yml` file and update the profiling pipeline to account for this change.