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Hi!
I have a question about the BIDS-Apps/MRtrix3_connectome Docker. I have organized my dcm images in accordance with the BIDS specification. In my bids_dir I have the sub- folder containing the a…
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docker run -it --rm -v $PWD/ds003:/data:ro -v $PWD/ds003-fmriprep:/out -v $FREESURFER_HOME/license.txt:/opt/freesurfer/license.txt poldrackl
ab/fmriprep:latest /data /out/out participant --participan…
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Getting this:
```
Node: _autorecon30
Working directory: /scratch/users/oesteban/francisco/work/fmriprep_wf/single_subject_P01_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/ma…
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After fixing a bug in issue #149, the thickinthehead function fails when running on large image volumes. Inside this functon, Mindboggle calls the ANTs ResampleImageBySpacing command to resample segm…
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Running FMRIPREP using singularity.
```
Node: _autorecon30
Working directory: /scratch/03763/oesteban/fmriprep-phase2/work/ds000172/sub-control01/fmriprep_wf/single_subject_control01_wf/anat_prep…
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https://www.mcgill.ca/bic/resources/omega
from webpage:
> This free-access continuously expanding repository also contains anatomical MRI volumes, demographic and questionnaire information, and …
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Meanwhile we can't implement this in a dynamic fashion with duecredit, we need to credit the authors of the huge amounts of software that fmriprep uses.
Update the documentation with these literate…
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Registration crashes:
```
Node: fmriprep_wf.single_subject_10_wf.func_preproc_task_Emotionregulation_run_04_wf.bold_reg_wf.bbreg_wf.bbregister
Working directory: /scratch/users/oesteban/phase2-11…
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Problem 1: `InstanceNumber` is Type 2 attribute - it can be missing. As of current version of dicom2nifti, missing `InstanceNumber` results in no output produced.
Problem 2: There is also no hard r…
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https://openneuro.org/datasets/202020206473303030303137/versions/3030303031372d3030303031?app=FMRIPREP&version=5