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Used:
Servers: http://localhost:8080
Logins: Modeler & Manager
Tag-123 & NCI Edit-0.4.7
Steps to reproduce:
1.Launch protégé server and client
2.Log into the local server (8080), login:…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/BioinformaticsFMRP/TCGAWorkflow
Confirm the follo…
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I just have a few change suggestions for the Summary section - correcting a couple of typos and some conceptual stuff regarding NF1.
Original:
> The repository contains instructions to replicate and…
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cancer_study_identifier: gbm_fmi_mskcc_2016 (change from mixed_gbm_mellinghoff_impact to gbm_fmi_mskcc_2016)
Total sample number: 618 (as of 3/25)
FM cases: 159
IMPACT: 459
TRF030626 still needs OS…
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Set up a automatically way to check in new gliomas cases from IMPACT weekly and add them into the merged study (cancer_study_identifier: mixed_gbm_mellinghoff_impact)
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@SamMcConnell
ChIP-seq data for CEMT_47 (another glioma sample) has just become available. Could you link the bam files to respective folders like we did for the other gliomas? Thanks!
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Sample from GBM : 154 cases ( will add another 32 cases later)
MSK-IMPACT Gliomas: 438 cases
- Combine the clinical and timeline data from two datasets.
- Remove gbm_mellinghoff study from MSK porta…
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We don't want any sentences with "incubating" or stuff like that. We should either get rid of all "methods" sentences (whether in the "Methods" section or not) or build a model that recognizes if a pa…
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_Originally reported by_: @n1zea144
Can we make the links to observation details less ambiguous / more visible?
[http://cbio.mskcc.org/ctd2-dashboard/#submission/1703963](http://cbio.mskcc.org/ctd2-…
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```
This is the current list of tumor types that are being imported into the GDAC
portal. This list should be updated to reflect latest firehose export.
brca : Breast invasive carcinoma
coadread : …