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name: stochastic differential equation method
definition: Method for simulation a system of stochastic differential equations (SDEs)
subClassOf: KISAO_0000018, KISAO_0000035
Reported by: jonrka…
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name: absolute steady-state tolerance
definition: absolute error tolerance of the steady-state
subClassOf: KISAO_0000211
algorithm: KISAO_0000496
isImplementedIn: SUNDIALS
Reported by: jo…
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name: relative steady-state tolerance
definition: relative error tolerance of the steady-state
subClassOf: KISAO_0000209
algorithm: KISAO_0000496
isImplementedIn: SUNDIALS
Reported by: jo…
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name: species transition probabilities
definition: probability of each species to be chosen for the next state transition
subClassOf: KISAO_0000201
algorithm: KISAO_0000450
isImplementedIn…
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---
id: vcell
version: 7.4.0.07
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_VCell/14226e2f85acdb7f3e9abd39017faa0121200689/biosimulators.json
specificationsPatch:
…
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---
id: amici
version: 0.11.16
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_AMICI/629d0825ad2e1a8585c0e6bc392b667786f40acc/biosimulators.json
specificationsPatc…
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To be able to set initial concentrations or initial amounts via SED-ML and to access the respective quantities in the data generators the additional symbols `amount` and `concentration` must be added.…
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• Name: Hybrid Tau-Leaping Method
• Synonyms: None
• Brief description: A continuously coupled hybrid deterministic/stochastic simulation algorithm for biochemical networks. Biochemical species are …
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Create new term: synchronous updating policy
Definition:
An updating policy where all enabled transitions occur simultaneously. Thus a state will have at most one successor.
Position:
charact…
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name: primal-dual interior point method
definition: The Interior Point method approximates the constraints of a linear programming model as a set of boundaries surrounding a region.
subClassOf: …