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1. parse
2. generate ids
3. publish to LDS when the following checks pass: check referenced note_id, person id, visit_occurrence_id and visit_detail_id exist within the payload.
4. optional - gener…
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My organization would like the Denver ED Trauma Organ Failure Score and Exponential Injury Severity Score (overall score and scores for 6 body regions—head, facial, pelvic, chest, extremity, and exter…
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see [bigQueryLowerCase](https://github.com/OHDSI/SqlRender/blob/main/java/org/ohdsi/sql/BigQuerySparkTranslate.java#L353) function
example:
```sql
SELECT * FROM omop.CDM_SOURCE
```
is lower cas…
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### Expected behavior
### Actual behavior
Hello, I'm a data engineer with the Maine Health Institute for Research. We have recently installed got Atlas setup here and our analyst is running into a…
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We are currently working on converting multiple PCORNet datasets into OMOP CDM. OUT ETL process is converting directly from PCORnet CDM to OMOP CDM.
Would it be possible to have the value of “Ou…
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Saw your posting to Tiffany Callahan's OMOP2OBO site. I bask in the shadow of both Tiffany and Shahim.......
Based on Issue #1, I may simply be too early with kicking the tires on the code......
…
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### Expected behavior
Achilles analysis runs on cdm_v6
### Actual behavior
SQL error generated due to incorrect column name in 500.sql
left join @cdmDatabaseSchema.concept CN on C.conditio…
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### Add VISIT_DETAIL domain to all CDM pipeline
### OMOP: VISIT_DETAIL map to VISIT_DETAIL
pk should be mapped to newly generated n3c ids
pk should exist in the payload, if not they should be add…
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* vent data from obs_gen to device
* If the O2 device maps to a SNOMED code, OBSGEN_TYPE should equal ‘SM’ and OBGEN_CODE should include the SNOMED code.
* If using either of the custom codes, OBSG…
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SNOMED code '59000001' is 'Surgical pathology consultation and report on referred slides prepared elsewhere". This is the only concept I can find within OMOP that represents a pathology procedure per…