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We're interested in using the hypothesis javascript client for our Manubot HTML pages (https://github.com/greenelab/manubot-rootstock/issues/90). We want to apply Hypothesis to pages like https://gree…
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Dear Dr Greene:
On behalf of the Editor, I am pleased to inform you that your Manuscript rsif-2017-0387.R1 entitled "Opportunities and obstacles for deep learning in biology and medicine" has bee…
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The Deep Review predates the Manubot (the CI-based system we use to process the manuscript). In fact, [`greenelab/manubot-rootstock`](https://github.com/greenelab/manubot-rootstock) (a template GitHub…
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@agitter we should merge in the latest changes from manubot-rootstock.
I've done this process several times and don't find it too difficult. But if you would like to try for experience, go ahead. W…
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GitHub is mentioned quite often in this manuscript, but it might be helpful to point it out that it's not technically tied to this platform.
Another thing worth mentioning might be the simple integ…
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We are calling WeasyPrint via pandoc. With 0.42 and a certain input, the command never completes, but does not throw an error, causing [builds to timeout](https://travis-ci.org/greenelab/scihub-manusc…
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There are certainly topics that were not covered in the initial review. Although many were worth covering, there were cases where we didn't have the time or the personnel to review these topics before…
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I am writing a subsection of deep learning for biomedical text mining. I need to add a table but I am not sure if our script supports it because tables aren't part of the core Markdown spec, but they …
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In #492 we removed the link for the ChestX-ray8 imaging dataset because we were unable to access it. The conference paper has now appeared, and there is a link to the data https://nihcc.app.box.com/v…
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Greetings, I recently created my own CSL specification for a custom bibliography format in https://github.com/greenelab/manubot-rootstock/pull/68. I was not able to exactly achieve the "ideal" bibliog…