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ProteomicsLFQ requires input with Posterior Error Probability scores. Attempting to run this tool with different scores only leads to failure with this message:
/OpenMS-2.8.0/src/utils/Proteomi…
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## via #include reduction
we should look into optimizing our build time by removing unneccessary includes, especially from widely used headers (as partially done in #4333 and #4340).
Good candidat…
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Maybe in a colored box e.g. something like
In this section, you will learn:
- how to load, process and store mass spectra and chromatograms
- how to plot spectra
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# Overview
As part of the recent migration that re-built many packages for Python 3.10, we encountered issues with recipes that either haven't been re-built in a while or that specifically had issu…
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The current design of MSExperiment allows to filter e.g., all MS1 level. getMSLevel would still return MS1 as one of the contained level because it uses an internal member variable.
This leads to har…
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In the X!Tandem adapter (2.3) I chose the modification 'Acetyl (N-term)' as a fixed modification to identify peptides with acetylated N-termini (introduced as a chemical modification). The adapter g…
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A careful reviewer has come up with this (I'll cite my correspondence with him below).
This is related to #992 and #1041.
To summarize:
The goal here would be to find an interface which allow to writ…
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Hell everyone,
it seems like the CTD entry when using `-write_ctd` is wrong. It allows for two values `true/false` which, when applied, lead to errors like this:
Trailing text argument(s) '[…
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IDPEP crashes on the following idXML [1] with
"No data collected. Check whether search engine is supported."
The IDs come from several fixed MSGF+ searches combined using ConsensusID. ConsensusID fo…
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Greetings
I have been trying to install your tool to simulate MS data, so I installed ruby.
```
sudo apt install ruby-dev
```
Then attempted to install mspire-simulator.
```
sudo gem install …