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## Purpose
Integrate derived BigBrain datasets in the portal, as a first use-case of derived data support. Make sure that derived dataset can be linked to their parent (and conversely), in the port…
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I'm trying to use pysurfer to plot brain activations on inflated surfaces. So far, I've been able to get left and right hemisphere plots separately as well as animations. However, whenever I try to pl…
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Hello,
I opened this thread in oder to discuss some parts of the MRI/DTI and later link it to the FEM computation.
So, I have started to work on some part of the DTI and I'm trying to understan…
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### Script/Job File
```
#!/bin/bash
#$ -pe smp 16
#$ -q UI
#$ -m bea
#$ -M adriana-rivera-dompenciel@uiowa.edu
#$ -o /Shared/vosslabhpc/Projects/CREST/code/fmriprep/out/
#$ -e /Shared/voss…
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# Problem
Remote visualization for brain surfaces and time series from fif files using data from S3.
# MVP:
A basic app that can load freesurfer segmented surface in the browser and overlay textu…
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At some point we should have a way of "label-izing" volumes like we do for surfaces. Freesurfer probably has utilities/files for this but I've never looked or worked with them (probably aseg.mgz), and…
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Hi,
I have preprocessed my fMRI data using fMRIPrep with fs-no-reconall. My output functional and structural files are in nii format. However, later I realized I want to use 'The Cole-Anticevic Bra…
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Not sure how helpful this is going to be as I don't really know what I was doing (as usual!), but I got a couple of crashes I couldn't figure easily so writing them here to remember about it:
First…
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As extension to #41, change definition of a cluster to be constrained to lie within a parcel as based on ROI atlas provided for the surface/volume. This matches the behavior of some Connectome Workben…
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Hello,
I have two question. I would greatly appreciate it if you could help me with those
1- I would assume the main factor for calculating E-field after selecting the TMS intensity and location i…