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```
The portal dialog lists all available genomic profiles without any filtering.
However, expression values cannot be converted to alterations by ChiBE, so they
should not be displayed to the user.…
-
Dear Aleksander,
I would like to know if you ever tried to use Romulus on ATAC-seq data ?
If so, do you have any advice to analyze this type of data ? Do I need for example to shift the reads before …
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```
What steps will reproduce the problem?
1. Go to: http://miso-dev.cbio.mskcc.org:58080/gdac-portal/
2. Login
3. Select Kidney renal papillary cell carcinoma
What we see:
Under Genomic Profiles,…
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```
What steps will reproduce the problem?
1. Go to Home
2. Click on "Download Data"
"Select Genomic Profiles" and "Select Patient/Case Set" is hidden.
```
Original issue reported on code.google.c…
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```
Addd back z-score threshold for mRNA expression profiles under home page query
section: "Select Genomic Profiles".
This should work identically as it did before, e.g. only be displayed when a
…
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Yesterday when Firefox got 52.0a1 over 51.0, it crashes every time I try to open FireBug.
Here's the content from Firefox's crash report:
```
Accessibility: Active
AdapterDeviceID: 0x1926
AdapterDri…
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```
"Genomic Profiles" and "Case Sets" items in the multi-cancer view look like
links, but are not clickable
Not sure if this is intentional - should probably just be a mouse-over without
appearing…
-
```
On the cross-cancer query results page, there are two links now:
Genomic Profiles
Case Sets
When you mouse over the little icon, you see a mouse pointer icon. When you
mouse over the text, you…
-
```
What steps will reproduce the problem?
1. Go to the home page.
2. Enter a query, e.g. GBM, Mutations, TP53.
3. Click Submit.
4. On the results page, click Modify Query.
What is the expected o…
-
```
In the node legend, annotation of Diploid should be removed, because white
space does not necessary represent diploid samples (by default only AMP and
HOMDEL were provided). We should probably a…