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Generate CSF surfaces for the real data example. Probably, a good idea to take a look on: https://github.com/nipy/nipype/pull/307
I also recall here an email from @meribach on April, 30th:
> En VTK …
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I would like to obtain an affine (as well as nonlinear) transform from each image volume to a template (yet to be supplied; currently set to the MNI152 template). For this I have included nipype's an…
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I'm experimenting with reprozip as a way to package up software stacks for version quarantine, so I ran it against a test set of data and now I'm trying to pack up the experiment, here's my config fi…
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A mismatch between the produced labels from the gcs files is observed as compared to the provided excel sheet ParcellationLausanne2008.xls for the resolution 500. highest resolution is checked and cor…
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what we take out in terms of eroded deep grey nuclei from the wm mask, is to what is in ROI_HR_th.nii, because it contains subcortical rois of different sizes. the ventricles are segmented badly. when…
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and parts of it running only for wm mask correction / inspection:
it is at the end of the step2 that you need to check and corrected if needed the wm.mgz (white matter volume) and and relaunched the …
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I would like to have the possibility to define any kind of cortical and subcortical parcellation in the pipline. There are some efforts to improve parcellation:
www.braincolor.org