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I am running ancombc2 on the data outlined in the tutorial and my own data but I do not get any passed_ columns in my output object. I am following the tutorial exactly is the latest version still sup…
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OMA still has examples with exprs_values and assay_name arguments that are now deprecated and replaced with assay.type
-> this should be changed across the entire OMA.
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I'm newer to data analysis in general and still learning how to use ancombc. I keep getting this error when trying the run the analysis: "No samples remain under current cutoff". I understand that mea…
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Dear Frederick,
Thank you for developing ANCOMBC. I'm a fairly new user and still learning it.
Recently, I have been trying to apply ANCOMBC2 to a dataset but have had a few issues. The most recent …
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I have run ANCOMBC2 in the past, an now I tried to run it again. The process starts and the this error appears
Estimating sample-specific biases ...
Sensitivity analysis for pseudo-count addition …
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```
biocbuild@kunpeng1 ~/git> R CMD build --keep-empty-dirs --no-resave-data ANCOMBC
* checking for file ‘ANCOMBC/DESCRIPTION’ ... OK
* preparing ‘ANCOMBC’:
* checking DESCRIPTION meta-information…
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Hi Huang,
Thank you for developing the ANCOMBC package, now I noticed it has uploaded v2.21. However, I found very different results between these two versions.
In v2.20, 132 different taxons we…
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Hi,
I have been trying to run the tutorial example for ANCOMBC2 (website: https://bioconductor.org/packages/release/bioc/vignettes/ANCOMBC/inst/doc/ANCOMBC2.html); however, the following error has b…
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Hi!
It appears that you have updated something within your package and my results are drastically different from before.. Different bordering strange! If I had a variable being significant in 15/15…
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Hi Frederick,
I am sorry to bother you again. I have patients which were measured 2x (once at baseline, once after intervention) who were allocated into 4 different diet groups. When running the f…