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After World War II, antibiotics were considered "wonder drugs", since they were easy cures for what had been intractable ailments. To learn which drug worked most effectively for which bacterial infec…
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## checklist
- indexing in data, `var_to_char` indexing starts from 1 not 0, i.e. `var_to_ind['Antibiotics'] = 9` but indexing should be 8
- float/int?
- threshold setting
...
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I filled in the Admission form and saved it successfully. I then viewed the admission form and saw that a number of fields were missing data:
### Select fields:
Eye opening
Verbal response
Motor resp…
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I can't seem to find a None or other term. I would like to be able to say that something has resistance to an antibiotic which is not specified. Additionally, I would like to be able to say that somet…
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https://www.nlm.nih.gov/exhibition/fromdnatobeer/exhibition-interactive/illustrations/penicillin-alternative.html
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We need maps between terms in the [template](https://github.com/waldronlab/curatedMetagenomicDataCuration/blob/master/inst/extdata/template.csv) and formal ontologies. Preferred ontologies for:
* b…
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I have noticed strange behaviour using the `PubMedFetcher` API.
When you try to use the `article_by_doi` method, often it does not return an article, even when that DOI is available in PubMed. I du…
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In 'concepts/diagnosis/reason_for_admission.ipynb' script:
1) The following are marked as diagnoses variables, but not surgical. Is this correct? And if so, why are they not surgical?
--Not surgic…
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TYPE | MEASUREMENT
-- | --
ITEM | Result of Culture and Microbiology Susceptibility
FORUM POST | http://forums.ohdsi.org/t/mapping-microbiology-susceptibility-into-omop-cdm4-observations/167
SOLUT…
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```
What steps will reproduce the problem?
1. Load file "sample_data/IDOMAL.obo".
2. Read the {term}->def() record for "IDOMAL:0000209".
3. Observe that "Dorland'" is missing in the "db" field.
The p…