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There is a "bug" when a user watches "Malo", they will get hits on "Malosini". This is undesirable in this case, because they are separate spells. However, someone might set up a watch for "banded" …
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Currently we benchmark:
BLAS level 1
- ddot
- ?nrm2
- ?axpy
BLAS level 3
- ?gemm
- ?syrk
LAPACK:
- ?gesv (`linalg.solve`)
- ?gesdd (`linalg.svd`)
- ?syev (`linalg.eigh`)
…
ev-br updated
3 months ago
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### Description
I was wondering if there are plans to implement [scipy.linalg.solveh_banded](https://docs.scipy.org/doc/scipy/reference/generated/scipy.linalg.solveh_banded.html#scipy.linalg.solveh_b…
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The issue only seems to occure when length(reference) == length(pattern)
```c++
#include
#include
#include
#include
#include
#include
#include
using namespace seqan;
using nam…
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This isn't a common case, but it's worth bringing up as a base-case issue. Passing a single nucleotide to banded global alignment can give spurious alignments.
```c++
#include "seqan/align.h"
#i…
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https://github.com/JuliaLinearAlgebra/BandedMatrices.jl/blob/9a573b1d93ee6d3b229db7d00ef1bd8818539e42/src/banded/BandedMatrix.jl#L84-L87
And
https://github.com/JuliaLinearAlgebra/BandedMatrices.jl…
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```julia
julia> using BandedMatrices
julia> A = brand(12,10,4,3)
12×10 BandedMatrix{Float64,Array{Float64,2}}:
0.515614 0.847866 0.668239 5.75042e-5 ⋅ ⋅ ⋅ ⋅ …
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Hi, Nice to see recent progress on banded POA! Is there any support for some kind of clipping/end-gap feature for POA to allow semi-global/overlap alignments to the graph?
cc: @lorewar2
ctsa updated
6 months ago
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# Description
This issue is being raised to track and resolve the concern raised by @AGL-CDR as part of https://github.com/ConsumerDataStandardsAustralia/standards-maintenance/issues/627#issuecomment…
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When using the _lyapunovspectrum_ function, it would be nice to use the Jacobian's structure (diagonal, banded, rank1, and so on) especially as long as one doesn't use a GPU for the matrix multiplicat…