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per Chris call repaired table `biosample` and the raw table `biosample_raw`
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- name too general
-remove SIP
- change meanings to see_alsos
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Given KECKO terms bellow, there might be an unclear usage of “biosample” and “sample” please correct me if am wrong
biosample processing defined as:
“A material processing which prepares a biosamp…
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## To move from https://github.com/turbomam/biosample-xmldb-sqldb/issues/42
@ssarrafan @emileyfadrosh and others from NMDC went through milestones and priorities and wanted to follow up something t…
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could be present/reached through direct `.wasAttributedTo` of a `BareAsset` but also via `.wasDerivedFrom[]:BioSample.wasAttributedTo` (and even more funny since `BioSample.wasDerivedFrom` could be a …
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The biosample class in the NMDC schema includes a variety of slots for capturing web-resolvable identifiers such as those from GOLD and INSDC.
Several of those identifiers are already materialized …
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The get-geo-annotations.R script here:
https://github.com/Sage-Bionetworks/syndccutils/blob/master/R/scripts/get-geo-annotations.R
extracts links on a per-sample/per-file basis to BioSample. e.g.,…
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The following proposal for a BioSample profile was made at the [8 May 2019 F2F meeting](https://docs.google.com/document/d/1k5SVKreKbcuAzZ_Hp5YkMN6S1F2ROMHbjXNpdD5G4io/edit#heading=h.yqhzs8hxknqp).
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I checked the code relating to BioSamples submission and I can not see anywhere if we handle errors relating to AAP fault or when BioSamples would return other then success. It looks like we only hand…
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Adina completed metadata via the submission portal for GLBRC see study here: https://data.microbiomedata.org/details/study/nmdc:sty-11-e4yb9z58
I am pretty sure this is this GOLD study : https://gold…