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Hi,
I keep running into the same error when using network.compress()
Traceback is as follows:
>compress
>compress_inner
>cancel_clementine
> clementine_equality_compression
>redund
wit…
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The following example simulation runs did not succeed:
Budding yeast cell cycle (Irons, J Theor Biol, 2009; SBML-qual; BoolNet; synchronous) (615b567970c4195fe6b44eb5)
"Cannot GET /runs/615b567970c41…
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---
id: cbmpy
version: 0.7.25
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_CBMPy/069f1d42b9b1d815cdbc60d3a27920664ab274d8/biosimulators.json
specificationsPatch…
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---
id: cbmpy
version: 0.7.25
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_CBMPy/db2bea2489f140eb1aefc79f3a95ab85b6f7af32/biosimulators.json
specificationsPatch:
…
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name: optimization solver
definition: Optimization solver such as CPLEX, GLPK, or Gurobi
subClassOf: KISAO_0000201
isImplementedIn: COBRApy, CBMPy, RAVEN
Reported by: jonrkarr
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name: parsimonius FBA (minimum number of active fluxes)
definition: A technique for selecting a parsimonious flux distribution which has a minimal number of active fluxes.
subClassOf: KISAO_0000…
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---
id: cbmpy
version: 0.7.25
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_CBMPy/eb30451b34c7d1eab4a7cf59a8f3b498d94bd286/biosimulators.json
specificationsPatch:
…
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## Issue
We need to make it possible to exchange SED-ML files between simulation tools while allowing modelers to specify particular algorithms (e.g., that they actually used) and their parameters th…
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---
id: cbmpy
version: 0.7.25
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_CBMPy/b3df45e67b8ccdfd2fe366c62c2109ce7e754bf9/biosimulators.json
specificationsPatch…
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---
id: cbmpy
version: 0.7.25
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_CBMPy/d745c949e17df9f62cd385543be9613de522d721/biosimulators.json
specificationsPatch:
…