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**Describe the bug**
Skull-stripping using DeepMedic doesn't produce a mask
**To Reproduce**
Files are in: /cbica/home/sakoc/comp_space/lab/captk/180b/DM_ss
/cbica/software/lab/captk/centos7/1…
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Rebuild/Repackage DeepMedic to eliminate Pyinstaller vulnerability
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I made lomap compatible with python 3. It wasn't too bad, there was just one tricky step.
1. use '2to3' (comes with python) to convert lomap scripts to python3.
`/path-to-lomap/lomap$ 2to3 -w -n .…
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Hey,
Is there any way to ensure that the full extent of an image gets picked for training?
Cheers,
Sarthak
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Hi Konstantinos,
Thank you for sharing the work of Deepmedic, again!
My question is: I don't know why in the output log for training there is no cost (loss) for the validation dataset. There are c…
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This was due to an overwritten executable and has been fixed.
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**Is your feature request related to a problem? Please describe.**
Currently, the complexity of the installer mechanisms is too much, which makes things far likely to break and makes maintenance diff…
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**Describe the bug**
DeepMedic runs since it is CPU based but DeepScan and nnUnet gives error while running
**To Reproduce**
Steps to reproduce the behavior:
1. Have CUDA version 10.0
2. Run Fe…
umgpy updated
3 years ago
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Example:
The installed version of CaPTk on CUBIC (built by Sarthak, but installed system-wide) is trying to access files in /cbica/home/patis.
Running
```
module load captk/1.7.6
strace …
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**Is your feature request related to a problem? Please describe.**
More models will be coming in that require 1, 2 or more modalities, which the current inference engine cannot handle (it was designe…