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First of all, my apologies for asking this simple thing again. However, I am little confused despite reading the manual and talking to Prof Vadim once. It is mentioned in the readme, that it is prefer…
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Hello :)
I have a small issue using the DIA-NN interface.
I downloaded the recent version of DIA-NN (1.9) and found that some texts get cut off in certain parts.
It makes difficult to enter…
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Hi!
I'm currently exploring the skyline add-on in DIA-NN (which is very cool, thanks for that!).
I was wondering if there is a way that the Skyline settings are set based on the settings from the…
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Dear Vadim,
I just experienced an issue with DIA-NN. It exited the process for no apparent reason after having analyzed ~50% of the raw data and no reports were generated.
Can you see if i set so…
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Hi,
I'm running into a repeated issue in which DIA-NN (I'm using v1.8 for an intercomparison project) is exited before it finishes. It seems to fail after trying to load the spectral library. I end …
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Dear Vadim,
I was wondering, whether QuantUMS is integrated by default in the standalone version 1.8.1 of DIA NN? I have installed this version a while ago (in 2022) and am not sure, whether it was a…
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Dear Vadim,
I am working the last months through a MS labelled-free experiment. Recently I run all my samples with DIA setup in a Lumos instrument. I run the analysis through the software and I have …
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First and foremost, I would like to thank you for developing the fantastic DIA-NN tool.
I am currently working on a project where I aim to distinguish and quantify isoforms produced by alternative …
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Hi Vadim,
I have been using Dia-NN through FragPipe to analyze custom PTMs (one is in UniMod but the other is not). I managed to run it but PTMProphet has to be disabled because it has an issue wit…
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Hi,
For one of my analyses I recieved a spectral similarity distribution that resembles a normal distribuiton with the mean around 0.4 and a standard deviation of 0.18. When I compare this to spect…