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Thank you for your fab work of this AmpliconSuite-pipeline! I now want to use it of the species of Cavia porcellus. Could you share the steps how to create a data repo of non-human and non-mouse speci…
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### 💻 系统环境 | Operating System
macOS
### 🌐 浏览器 | Browser
Chrome
### 🐛 问题描述 | Bug Description
调用插件,然后只是消耗大量的token,没有任何返回信息,或者无效返回信息
### 🚦 期望结果 | Expected Behavior
_No response_
### 📷 复现步骤 | Recu…
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### Description of the bug
Nextflow is an excellent standardized pipeline tool and helps me a lot.
When I use the `circrna`, it always report error:
```
Execution cancelled -- Finishing pendin…
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## Command
/xxx/software/miniconda3/bin/python3 /xxx/software/AmpliconSuite-pipeline/PrepareAA.py -s xxx -t 10 --cnvkit_dir /xxx/software/cnvkit/cnvkit.py --bam /xxx/bam/xxx.marked.realigned.recal.ba…
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Hello there,
I am confued by the definition of 'eccdna_status' in the output of identify_wgls. What's the difference between cyclic and non-cyclic eccDNA? How could a eccDNA be non-cyclic?
Thanks…
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Hello,
I am running AmpliconSuite-pipeline and I got results successfully from most of the input bam files. However, in this particular bam input, I got this error:
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"Wrote 005-32_cnvki…
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Hi,
What if the alignment (soft-clipped reads) could align to multiple chromosomal regions (e.g. chr1 & chr2)? How will Circle-Map treat such reads?
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Hi
I was trying to run the CreSil software for a nanopore eccDNA dataset. I got following error in the CReSIL-identify step :
"CReSIL-identify.py", line 346, in main
(c, s, e) = node.split("_…
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https://mp.weixin.qq.com/s/fLmnAP6XXFNJ_-vr5ey0dg
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s/T1WSaCl8KnGtyTKSsny7Cw
ixxmu updated
2 years ago