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It would be nice to add a couple of sentences to the homepage about what ontologies are and why they are useful, below the "Welcome to the EMBL-EBI Ontology Lookup Service" heading and above the searc…
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For big organisations, they usually have a global footer and section-specific footers (about EMBL vs about EMBL's microscopy unit).
In both cases the footers span a section of pages, but the secti…
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Hi I need to parse non-coding and coding data and currently there are few problems, that I would like to address. I can create a pull request when done, but I would like to agree how to proceed.
1)…
nbuso updated
6 years ago
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Currently the "user interface feature'=lookup" annotation on a 'categorical specification tree' input list searches the OBOFoundry ontology given by the term prefix (e.g. NCIT_C28554 = NCIT ontology )…
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Day 4
In Google Colab, run cell
```
from stardist.models import StarDist2D
model_versatile = StarDist2D.from_pretrained('2D_demo')
```
Observe error
```
-----------------------------------…
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Currently we have a high level of the IA facets at https://embl-design-language.github.io/Springboard/information-architecture/#facet-structure-and-categories
They are:
```
1. Who
- people
…
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The Search team at EBI have contacted us to follow up from a series of new data field requests they had submitted to Andrew and Kostas back in 2021, as summarised in this [helpdesk ticket](https://hel…
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I noticed that a bunch of the MGI models have some identifiers like this:
`http://www.ebi.ac.uk/cgi-bin/emblfetch?style=html&Submit=Go&id=AK035432`
this one comes from http://noctua.geneontology…
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Hello I have a gff3 file such as :
```
1 Geneious CDS 101 10548 . + 0 Name=1_ORF104;product=hypothetical protein
1 Geneious gene 101 10548 …
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CDS entries with dataclass CON are checked to contain CO lines.
From the documentation for entries with (con)structed sequences is not clear the presence of CO lines is mandatory; see paragraph 3.4.1…
nbuso updated
6 years ago