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Most enrichment analysis tools are designed at the gene level and only support gene IDs.
The first step to performing GO analysis for proteomics data is to convert protein IDs to gene IDs and then…
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Hi
Great tool - thanks for writing it. I am running an RRA analysis and it crashes out with:
```
> FluteRRA(gene_summary = "SOX2.gene_summary.txt",sgrna_summary = "SOX2.sgrna_summary.txt",keyt…
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- [x] Note that the last Poll question should be set for multi-select -> updated in poll document
- [ ] Reboot computer and close other application before presenting :)
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I've recently started using your [Appyter for Independent Enrichment Analysis](https://appyters.maayanlab.cloud/Independent_Enrichment_Analysis/) to analyze the Enrichr catalog with a costume backgrou…
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Hello Prof. Yu,
I find your clusterProfiler (http://yulab-smu.top/clusterProfiler-book/) a useful tool and tried to follow the tutorial.
Since I am working on the gut microbiome and have KEGG pathwa…
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# Contribution Guidelines
1. **Initial Setup**
- Clone the repository: `git clone `
2. **Update Local Content**
- Ensure you’re up to date with the development branch:
```bash
git ch…
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test_adata=ad[ad.obs['celltype'].isin(['T-GO01','T-GO05'])]
dds_meta=ov.bulk.pyDEG(test_adata.to_df().T)
dds_meta.drop_duplicates_index()
print('... drop_duplicates_index success')
treatment_gro…
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Hi Tobias,
Thank you for creating the ITAG4.1 GO annotation for tomato! This is a valuable resource for the plant research community.
I am currently using your annotation to perform GO enric…
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Hello,
I am looking where I can find the data that I could get at supervised analysis step with deepof.visuals.plot_enrichment() script, for example B_W_nose2nose data, in order to plot some graphs…
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